rs229047071 SNP Detail

Summary

• ID
  rs229047071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113579734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCAACT CCAGGAGCTG
  ACATTCTGTT CTCAAGGTGC TACCCCCAAA GAGATGCATA AGTTAAAAAT GTAAAAATTT
  TATACCTTGG TACTGAGTGG TTGTGGGGCA TGCCTTTAAT CTCAGCACTC TAGAAGCAGA
  GGCAGGTAGA TCTCTGAGTT GGAGGCCAGC CTGACCTACA AAGATAAAGT GCCACGGTGT
  Y
  TTAGGTTTCC GTTGCTGTGA AGAGGCACCA TGACCAAGGC AACTCTTACA AAGGCAAACA
  TTTAATCAGG GCTGTCTTAC GATTTCAAAG GTTCAGCCCA TTATCATCAC GGTGGTAAAG
  CACGGTATCC AGCAGGCCAA GTTGGTGTTG GATGAGCCAA GAGTTCTATA TCTTGATCTG
  AAGGCAGCCA GGAGGAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911092	CHEV_6_113552767	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs229047071					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113579734 () rs orientation: forward

Symbol	Name	Function Class
Brk1	BRICK1, SCAR/WAVE actin-nucleating complex subunit	1999 bp upstream
Cpgi17850	CpG island 17850	1602 bp proximal
Gm67049	predicted gene, 67049	within coordinates
Gm67050	predicted gene, 67050	1793 bp downstream
Rr379958	regulatory region 379958	1394 bp downstream
Rr636548	regulatory region 636548	1693 bp distal
Rr636549	regulatory region 636549	1509 bp proximal
Rr636550	regulatory region 636550	1733 bp proximal
Rr636551	regulatory region 636551	1952 bp proximal
Tssr58230	transcription start site region 58230	1976 bp upstream