rs229031645 SNP Detail

Summary

• ID
  rs229031645
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTTTGCC AGCATAAAGA
  CACTCCGCCA TAGCATATGG TACGATATTG CAGCTTATAT TCATCCCTGC CCTCGCCCGT
  GCACAATGGA GCTTTTATAA CTGGGGTTTT TCTAAGGAAT TGTATTACCC TAACCAGTTA
  GCTTCATCCC CATTCTCCTC ATCCTCATCT TCATTTTAAA AAGCAGTGAT TACTTCAAGG
  K
  CTGTATTCAG TTTGCTTTGG AGCTTCTCTT TGCCCTGGGG CCTCTGGGCA CAGTTATAGA
  CGGTGGCTTT GCAGGGAGCC CTAGAGAGAA ACCTTCCACC AGAGCAGAGT CCGAGGAACG
  CTGCAGGGCT TGTCCTGCAG GGGGCGCTCC TCGACAGATG CCTTGTCCTG AGTCAACACA
  AGATCCGGCA GAGGGAGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369791586	MGP_WTSI_6_117123939	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229031645					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369791586	MGP_WTSI_6_117123939	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150882 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxcl12	C-X-C motif chemokine ligand 12			Intron
				mRNA-UTR
Rr637288	regulatory region 637288			1253 bp distal
Rr637289	regulatory region 637289			within coordinates
Rr637290	regulatory region 637290			130 bp proximal
Rr637291	regulatory region 637291			181 bp proximal
Tssr58395	transcription start site region 58395			416 bp downstream
Tssr58396	transcription start site region 58396			402 bp downstream
Tssr58397	transcription start site region 58397			367 bp downstream
Tssr58398	transcription start site region 58398			344 bp downstream
Tssr58399	transcription start site region 58399			315 bp downstream
Tssr58400	transcription start site region 58400			282 bp downstream
Tssr58401	transcription start site region 58401			248 bp downstream
Tssr58402	transcription start site region 58402			219 bp downstream
Tssr58403	transcription start site region 58403			201 bp downstream
Tssr58404	transcription start site region 58404			190 bp downstream
Tssr58405	transcription start site region 58405			134 bp downstream
Tssr58406	transcription start site region 58406			105 bp downstream
Tssr58407	transcription start site region 58407			83 bp downstream
Tssr58408	transcription start site region 58408			20 bp downstream
Tssr58409	transcription start site region 58409			within coordinates
Tssr58410	transcription start site region 58410			19 bp upstream
Tssr58411	transcription start site region 58411			35 bp upstream
Tssr58412	transcription start site region 58412			62 bp upstream
Tssr58413	transcription start site region 58413			75 bp upstream
Tssr58414	transcription start site region 58414			108 bp upstream
Tssr58415	transcription start site region 58415			123 bp upstream
Tssr58416	transcription start site region 58416			138 bp upstream
Tssr58417	transcription start site region 58417			192 bp upstream
Tssr58418	transcription start site region 58418			225 bp upstream
Tssr58419	transcription start site region 58419			244 bp upstream
Tssr58420	transcription start site region 58420			271 bp upstream
Tssr58421	transcription start site region 58421			290 bp upstream
Tssr58422	transcription start site region 58422			316 bp upstream
Tssr58423	transcription start site region 58423			324 bp upstream
Tssr58424	transcription start site region 58424			386 bp upstream
Tssr58425	transcription start site region 58425			431 bp upstream
Tssr58426	transcription start site region 58426			453 bp upstream
Tssr58427	transcription start site region 58427			480 bp upstream
Tssr58428	transcription start site region 58428			495 bp upstream
Tssr58429	transcription start site region 58429			560 bp upstream
Tssr58430	transcription start site region 58430			605 bp upstream
Tssr58431	transcription start site region 58431			701 bp upstream
Tssr58432	transcription start site region 58432			774 bp upstream
Tssr58433	transcription start site region 58433			810 bp upstream
Tssr58434	transcription start site region 58434			1248 bp upstream
Tssr62617	transcription start site region 62617			345 bp upstream
Tssr62618	transcription start site region 62618			322 bp upstream
Tssr62619	transcription start site region 62619			286 bp upstream
Tssr62620	transcription start site region 62620			253 bp upstream
Tssr62621	transcription start site region 62621			169 bp upstream
Tssr62622	transcription start site region 62622			354 bp downstream
Tssr62623	transcription start site region 62623			372 bp downstream
Tssr62624	transcription start site region 62624			487 bp downstream
Tssr62625	transcription start site region 62625			638 bp downstream
Tssr62626	transcription start site region 62626			734 bp downstream
Tssr62627	transcription start site region 62627			765 bp downstream
Tssr62628	transcription start site region 62628			900 bp downstream
Tssr62629	transcription start site region 62629			1080 bp downstream