rs229012822 SNP Detail

Summary

• ID
  rs229012822
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:75771547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCAAAC TCTGTCTTGT
  GATGGGTCTC AGAGAACACA ACCTGGCCTG CAGTCTCCAT TCGCTTCTCC GCTGGCGGTC
  TATGTGTCTC TTTCTTTCCT CCTGGGCTCG TGGCAAACCC CTATTGCATT GCTTGAGTTC
  TGACAGAAAG ACCTGCCCTC GCTGCCCCGT GCCTAACTAA GCCTTGGGCT TTCCAAAGCT
  R
  ACCGGTGTCC CCAGGACTCG CGTAGCTCCG CCCTGCACTG GGATAGCTCC GGAGCCCTAA
  ATCCAGGAGG TTAATGGAAG GGCGAGCTTT GGCCCCTCCC ATTTGGAGGG CGTGGATCAG
  AGGCCCCGCC CCAGATCCCG CCCATTTCAC CTGACTCTAA GGACGCTGCC GTGTTAGTTG
  CCCGGCACTG AGCGAGCGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380934111	MGP_WTSI_10_75398458	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs229012822					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380934111	MGP_WTSI_10_75398458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75771547 () rs orientation: forward

Symbol	Name	Function Class
Chchd10	coiled-coil-helix-coiled-coil-helix domain containing 10	mRNA-UTR
Cpgi1737	CpG island 1737	within coordinates
Rr384937	regulatory region 384937	1557 bp upstream
Rr401998	regulatory region 401998	31 bp upstream
Rr434184	regulatory region 434184	130 bp distal
Rr434185	regulatory region 434185	1130 bp proximal
Tssr94149	transcription start site region 94149	143 bp upstream
Tssr94150	transcription start site region 94150	165 bp upstream
Tssr94151	transcription start site region 94151	513 bp upstream
Tssr94152	transcription start site region 94152	561 bp upstream
Tssr94153	transcription start site region 94153	592 bp upstream
Tssr94154	transcription start site region 94154	611 bp upstream
Tssr94155	transcription start site region 94155	691 bp upstream
Tssr94156	transcription start site region 94156	1449 bp upstream
Tssr94157	transcription start site region 94157	1463 bp upstream
Tssr94158	transcription start site region 94158	1584 bp upstream