rs228964789 SNP Detail

Summary

• ID
  rs228964789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135299765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTGGAC AGTAGATGTG
  GCTGTTCAAG CCGGACACAC CCCAGAGCTA GCCGGTACAT GGGTTCCTGT CTGCAGTTAG
  GACCCATCAA TTCTGCCTGC AAGCGTTTGA GTTCTTAACC TGCTGAGGAA AAGCTCCAAA
  GAGAGAGACA GAGAAGGGGA GGAAACAACA AGAGGGTCAC TGCTAAAGAG GGGAGAAAGG
  R
  GAAGTCTGTT TCTTTCCTGC TAGCTCCTTG CCCACAACTT AAAGCGACTC ACACCCTCGA
  CTTCTGTCTT CTCCAACATC TGTACCTGAT ACTGAGGCTG AGAGTGAGGT CAGCGTCAGC
  CAGTCAAGGG ATTCTAGATC CCAGATGTGG GCAGGAATGC ACCTGCCTCT CGCCAGACAA
  CACAGATGAC CTCACCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363369623	MGP_WTSI_4_135128369	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	A	G	G	G	A	A	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	A	A	G	G	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228964789					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	A	G	G	G	A	A	G	G	G	G	A	G	G	G	A	G	G	G	G	G	G	A	A	G	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363369623	MGP_WTSI_4_135128369	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135299765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15075	CpG island 15075	1860 bp distal
Cpgi15076	CpG island 15076	770 bp proximal
Gm30888	predicted gene, 30888	1140 bp upstream
Grhl3	grainyhead like transcription factor 3	Intron
Rr367747	regulatory region 367747	1417 bp downstream
Rr398595	regulatory region 398595	1978 bp downstream
Rr602070	regulatory region 602070	922 bp distal
Rr602071	regulatory region 602071	650 bp proximal
Rr602072	regulatory region 602072	1166 bp proximal
Rr602073	regulatory region 602073	1655 bp proximal
Tssr43996	transcription start site region 43996	1078 bp downstream
Tssr43997	transcription start site region 43997	1169 bp downstream