rs228964313 SNP Detail

Summary

• ID
  rs228964313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79794703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTCTCT GAATTATTTT
  CCCCACCCAT GTTTCCCATT TGGACAGCAG CAGCAGCAGT AGCGTCATTT TTCCATACGC
  GTGGCATTCT TCTATTTCCC AGTCTGGGGA TATTAGAGTT CTAATGCACA GCTGTGCTGG
  GCATGTGAGG GAAAGCCCAC ACTGCAATCT TTGCTCTCCG TTTCTCTCTG TGCACTTTTT
  Y
  GTGGCATGTT AAATCTAATT AAAACTAGTG ACAGTTTGCA CGATGACAGG AAGCCAGGGT
  ACAGAGCTTG CTGACAGCCT TGCATAGAAC CTTACAGGTT TCTATGGAAA CTTCCTTCCT
  AGGATGGTTT AAAGAGTAAG GGGTTGGGGG GTGGGGCATA GAAATGATGT CTCAGTGGTT
  AAGAGCACTC AGTGCTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358593292	MGP_WTSI_3_79691318	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228964313					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358593292	MGP_WTSI_3_79691318	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79794703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13279	CpG island 13279	705 bp distal
Gask1b	golgi associated kinase 1B	Intron
Gm36569	predicted gene, 36569	579 bp upstream
Rr375226	regulatory region 375226	122 bp downstream
Rr578606	regulatory region 578606	1456 bp distal
Rr578607	regulatory region 578607	1021 bp distal
Rr578608	regulatory region 578608	93 bp distal
Rr578609	regulatory region 578609	523 bp distal
Rr578610	regulatory region 578610	483 bp distal
Rr578611	regulatory region 578611	565 bp proximal
Tssr29602	transcription start site region 29602	1394 bp downstream
Tssr29603	transcription start site region 29603	1332 bp downstream
Tssr29604	transcription start site region 29604	1275 bp downstream
Tssr29605	transcription start site region 29605	1187 bp downstream
Tssr29606	transcription start site region 29606	1169 bp downstream
Tssr29607	transcription start site region 29607	501 bp downstream
Tssr29608	transcription start site region 29608	441 bp downstream
Tssr33752	transcription start site region 33752	1223 bp upstream
Tssr33753	transcription start site region 33753	1158 bp upstream
Tssr33754	transcription start site region 33754	574 bp upstream