rs228942055 SNP Detail

Summary

• ID
  rs228942055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116243129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTATCTGT GTATACGTGT
  TCATCATGAT TTATAAGAAT TCTGGCGTAG TGAATCAGAA TGTGACTCCA GAGGAAACCA
  GTATCCCTCC ACAGTATAAT CACTGTGCCA TTTCTATGAC TATATAGTTG ACTGTTAATT
  TTCTCTAATC TAAGGATTAG TGGAGAAAGG GAGTTGTTTT GAATTGAATT TCATTGAACA
  R
  CCTTTAATGC ACGCTAATGT GTGCAGACGG CTGAAGTGAG TGATAGAGAC ATTGTCCCTC
  CCTTACAACG CTTGTAGTTT ACCAGCACGG GTGACAGACA CAGAAACAGT CCAGTTTTGA
  TGGGTATCAT GGGTGGAAAA GATAGTAAGC ATGAAAGATG TTGTGGGATC CTTGGTATTG
  GAGCCGCGGC TCTGGGGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369769136	MGP_WTSI_6_116216186	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	G	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228942055					SNP	A	A	A	A	G	A	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	A	G	A	A	A	G	G	A	A	A	A	A	G	A	A	A	A	A	G	G	A	A	G	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369769136	MGP_WTSI_6_116216186	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116243129 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17882	CpG island 17882			1532 bp distal
Rr399855	regulatory region 399855			1862 bp downstream
Rr637177	regulatory region 637177			1893 bp distal
Rr637178	regulatory region 637178			1356 bp distal
Rr637179	regulatory region 637179			288 bp distal
Rr637180	regulatory region 637180			within coordinates
Rr637181	regulatory region 637181			1039 bp proximal
Tssr58359	transcription start site region 58359			1943 bp downstream
Tssr58360	transcription start site region 58360			1902 bp downstream
Tssr58361	transcription start site region 58361			1886 bp downstream
Zfand4	zinc finger, AN1-type domain 4			Intron
				mRNA-UTR