rs228917843 SNP Detail

Summary

• ID
  rs228917843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:55017560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG GGATTTCCTC CCCAGAAGGA
  R
  GGGTCCCAGC ATCTCTCCTA CTACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320774358	CHEV_3_54914061	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228917843					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:55017560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13184	CpG island 13184	1776 bp proximal
Rr374991	regulatory region 374991	669 bp downstream
Rr576901	regulatory region 576901	417 bp proximal
Rr576902	regulatory region 576902	1479 bp proximal
Rr576903	regulatory region 576903	1868 bp proximal
Spart	spartin	1969 bp upstream
Tssr29147	transcription start site region 29147	1941 bp upstream