rs228893561 SNP Detail

Summary

• ID
  rs228893561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130550292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAGAAGG GAGGTTAAAG
  CAGTTAAGAA CACTTATTAA AGTAAGGTTT GAAAAATCTA AGCCTATGCC ACCATGCCCA
  GCTAATGGAG ACTCTTTAAT TTATAGTACT TATATGACTA CCCTGTGAAA AAAAGAAAGA
  AAGAGAAAAA AAAAAACCAG TACAGTAACA AGATGAAAAC TATGTGAGCA AATGTGCTTT
  Y
  AAATAATCCT AAACTGTACC AGACCAAAAA AAAAATCATT TTTGCAGTAA ATTTCAGTGA
  CAGGATTCAA AGGCTATTAG AACACACACT GGAAACTCCA TCTTAAGTAA GGGTAATTTG
  TTCTGGGTCT ATAACAAGGC AGCTTCAGAT GTTTTTATGG TAGTTCATTT GATTACTCTA
  AAGTTGTTGA TTACTCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ
ss359722455	MGP_WTSI_3_130459561	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ
rs228893561					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359722455	MGP_WTSI_3_130459561	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130550292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13827	CpG island 13827	1596 bp distal
Gm42997	predicted gene 42997	within coordinates
Gm43524	predicted gene 43524	818 bp upstream
Gm65129	predicted gene, 65129	1946 bp downstream
Rr585206	regulatory region 585206	765 bp proximal