rs228885520 SNP Detail

Summary

• ID
  rs228885520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:167029992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCATTT CCCCCCAACA
  AAGTAGGGGT ACACCGTACT GAATCACATG GGAAGGGTGC CTCTTAAGAG TAGTAGTCCT
  TGGAGAACTC GCTTGGAGCC CCTGCCTTTT AACCGGTATA CTCATCGTGA GGAGCCAGGA
  GCCTCTGTGT AGGCCTCCAT GGGGGGAAAC AGACTCCAGA CTCACCTTGG CGGCCACCGA
  Y
  GAGTTGGGCT TCTCCAGCAG GTCCCAAAGT TTCTTCCTCT TCTCAGCACA GCACGTGTTG
  TCGAACTCCT CGCCCTCCCG CTCCCGCAGC GTCTCAGCCT CCCGCTTCAG CTCCTCGTTC
  ATCTGCTCCT TCTTTTGGTG GTAGCGGGCC TGGCAGCAGG ACTCCAGGTA GATCTCATCG
  ATGCCCCAGT AGTCCAGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356500164	MGP_WTSI_2_167013572	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228885520					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356500164	MGP_WTSI_2_167013572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167029992 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1110018N20Rik	RIKEN cDNA 1110018N20 gene			677 bp upstream
Kcnb1	potassium voltage gated channel, Shab-related subfamily, member 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr570485	regulatory region 570485			122 bp proximal
Rr570486	regulatory region 570486			140 bp proximal
Rr570487	regulatory region 570487			736 bp proximal
Rr570488	regulatory region 570488			1564 bp proximal
Tssr21792	transcription start site region 21792			1588 bp upstream
Tssr21793	transcription start site region 21793			1607 bp upstream
Tssr27748	transcription start site region 27748			552 bp downstream
Tssr27749	transcription start site region 27749			699 bp downstream
Tssr27750	transcription start site region 27750			715 bp downstream
Tssr27751	transcription start site region 27751			757 bp downstream