rs228872226 SNP Detail

Summary

• ID
  rs228872226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126402563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGATAA TAAGTATTTG
  GAATTTTTAA TAGTAAAGTG TTTTTCCCCT ATAGTTTTCA AGACATTTTA TTAATATGAT
  GTACACACCC TGAAAAGTTA AGAATAATTT AGATAAAGGG GGCTTTTTAA AAACTAGGGC
  TGGAAGGATG TGTCAACAGG TAAGAGCACT TGGTGCTCTT GCAGAGGACT GGAATTCGGG
  R
  CTCAGTGCTC ACACTGGGTG GCTCCCCTGC CTGTTTCAGG GGATTTGAGA GTCTGTTCTA
  CATTCATGGC ACCTGCATGC ACACGCATAC ACACAACACA CACACACACA CACACACACA
  CACACACACA CCACACACAC ACAGAAGTTA AACTTCAATT TTTTTTTAAG AATTAATATA
  GCAAGAGAAA GTTGATCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320946666	CHEV_3_126311832	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228872226					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126402563 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			within coordinates
Rr584652	regulatory region 584652			273 bp proximal
Rr584653	regulatory region 584653			484 bp proximal
Rr584654	regulatory region 584654			1989 bp proximal
Tssr31576	transcription start site region 31576			1793 bp downstream