rs228863477 SNP Detail

Summary

• ID
  rs228863477
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:5992133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCTCTC TCCCAGCCTC
  AGCGTGAGTG CCAGTGAGTG CCGAGGGAGC GGGTGGGAGT GCTGAGTGAG TGGGTGGGTG
  CCAGGCCTGG GGAGTTCTTA AGACCTGCAG CCCTGAGAGC GAGCAAGCCG AGCGGGAGAT
  TGAAGGGCCC AGGGAGGCTT ACAGAAGACT GGGGGCACAG GTGCCAAGCA AGCATGCCCC
  M
  CCACCACCAC CACCACCAGT CCTTGCCCTC CATCCTCTGT CTTCAGTAGG TAACTCTCAA
  CATGCCTGGT CTCCATGGCA ATTGACTCAT CGATGAAACT CATTCAATCC TCTCCACCCC
  CATTTTCAAA GCTCACACTG AAGTTCTGCT CTTCTCTGGT TCCATCCGCT TGCTGTTAAA
  CTGCAGATGT GGGCCATTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321730832	CHEV_6_5942133	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228863477					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5992133 () rs orientation: forward

Symbol	Name	Function Class
Dync1i1	dynein cytoplasmic 1 intermediate chain 1	Intron
Rr626190	regulatory region 626190	within coordinates