rs228852571 SNP Detail

Summary

• ID
  rs228852571
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:152423603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGCATGC GGGGCCCGCT
  GGGCACCGAG GAGGAGCTGC CGCGGCTGTT CGCGGAGGAG ATGGAGAACG AGGAGGAGAT
  GTCAGGTGAG GGGGCGCGGG GACCTGCTGG CCCGGGACGC GGGAGGGGCG CGAGGCTGCG
  GGCTGCGCTC CCGCCCTGCT GGCGCCGCGC TAGCCAAGGG CGCGGGGCCG GGCGAGCTCC
  S
  GGGCGCGGCG CGCGGGGCGG GGTGCACTGG GACCCCCGGG CAAAGCCGTG GTGGGGGCCT
  GCGCGGGCTG CGGAGCGGGA GGGGGCGCGG CGAGCCGGGG TCAGCCGCGT GCCCTTGAAG
  GCGGCGGGAA GCGCGCGCCG CGGGCGGGGC GAGGACGGGC CGCGCGTGGG GAGCTGGCGA
  TGCCCGAGCC GGGGAGCGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss363710647	MGP_WTSI_4_151713255	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs228852571					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363710647	MGP_WTSI_4_151713255	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152423603 () rs orientation: forward

Symbol	Name	Function Class
Chd5	chromodomain helicase DNA binding protein 5	Intron
Cpgi15412	CpG island 15412	within coordinates
Rr605852	regulatory region 605852	249 bp distal
Rr605853	regulatory region 605853	within coordinates
Rr605854	regulatory region 605854	1818 bp proximal
Tssr40549	transcription start site region 40549	437 bp downstream
Tssr40550	transcription start site region 40550	384 bp downstream
Tssr40551	transcription start site region 40551	301 bp downstream
Tssr40552	transcription start site region 40552	179 bp downstream
Tssr40553	transcription start site region 40553	148 bp downstream