rs228847665 SNP Detail

Summary

• ID
  rs228847665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54493859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGCCATA CCAGAAGAGG
  GCGTCAGATC TCATTATGAA CGGTTGTGAG CCAACATGTG GTTGCTGGGA TTTGAACTCT
  GGATCTTTAG AACAGTCAGT GCTCTTACCT GCTGAGCCAT CTCACCAGCC CAACACTTTT
  TTGAGAATAT TATATATGAG TATTTCTATC CTTTCTAATG GCTCCCTTTC CCACCTACAA
  Y
  TTCTCCCATG TCTCTCTGTT CCCTCTTAAA ATCACGACCT CTTGCTCTTT AATTATTTTT
  ACTTACACAC AGACAGACGT ATACATTTAA CCGGCTGGGT CTGTTTGCTG TTGCTCGTAT
  GTGCACATGC ACACGTGCTC AGGGCTGACC GTGTGGAACT GGGAAATCTC TCAGGGGCCT
  TGTCCCTGAA GAAGACTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772022	CHEV_3_54390360	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228847665					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54493859 () rs orientation: forward

Symbol	Name	Function Class
Gm40050	predicted gene, 40050	within coordinates
Rr576811	regulatory region 576811	856 bp proximal
Rr576812	regulatory region 576812	1810 bp proximal