rs228836773 SNP Detail

Summary

• ID
  rs228836773
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137572885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTGGTAC TTTTGTTGTT
  TCTTTGTATC ATATGACCTC TTAGGGTCTT AAAACTTGGG AAGAAGCTGG AGGTAACTGC
  TTTTGGCGTC CCCCCCCCCC CCAATTGACA GTTAACTAAT GTGAAAGGGC CTGTATCCTA
  AGGTGGGACA CAAGTACAGA GACCCTCAGG GTACAACGAA AGTACCTCCA CCGAATGAAC
  K
  TCGGATATAA TTTGCTTTTA GTGACCAGAC ACAGGTGTGA AATGCTAGTC ACATCTTGAT
  TCATGCCAAG CATGTTCCAT TATTATACAT TGACCCCTTT CCCCTCCCTG AGCCTTAAGA
  CATGTATCCT AATTCCTGGA GCAAATCAAA CAGAATAGGA GGTGCTTAAG CAGCCTATGT
  GGATGAAAGA ACTTCCTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894932	MGP_WTSI_3_137530088	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228836773					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894932	MGP_WTSI_3_137530088	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137572885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	1296 bp distal
Cpgi13867	CpG island 13867	227 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	mRNA-UTR
H2az1	H2A.Z variant histone 1	202 bp downstream
Rr398061	regulatory region 398061	1119 bp downstream
Rr586003	regulatory region 586003	1889 bp distal
Rr586004	regulatory region 586004	1352 bp distal
Rr586005	regulatory region 586005	754 bp distal
Rr586006	regulatory region 586006	61 bp proximal
Rr586007	regulatory region 586007	631 bp proximal
Tssr31916	transcription start site region 31916	1253 bp downstream
Tssr31917	transcription start site region 31917	1186 bp downstream
Tssr31918	transcription start site region 31918	634 bp upstream
Tssr31919	transcription start site region 31919	683 bp upstream
Tssr31920	transcription start site region 31920	735 bp upstream
Tssr31921	transcription start site region 31921	754 bp upstream
Tssr31922	transcription start site region 31922	834 bp upstream
Tssr31923	transcription start site region 31923	938 bp upstream
Tssr31924	transcription start site region 31924	953 bp upstream
Tssr31925	transcription start site region 31925	997 bp upstream