rs228822737 SNP Detail

Summary

• ID
  rs228822737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGCTGCTC TTGCTTTTCC CTCTCTTGCC
  CAGCAGGGCG TGCGCTTGAT TGGAGGAGGG ACGCACCAGT GAGCGCTGGA ATAGCTTGTA
  GGTCTCTGTG GAAACCGCAT CTGTGTTGCA AGGTGCTGTG TTGGAGTTCC CCGACTTTTC
  R
  AAAGAAATTC ATAAGTACTT AGGAGCAAAA TGATAGGATC TTCGAGGTAC GCTTTAAAGT
  TTTCTAGTCG AATTGAAGGC ATTTCGGTTC AGTCAGCCTC CAGAAAATGC AGGAAGCACC
  ATCGACTTAC TGTCTTCTCC TTGCAGAGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336223	CHEV_4_132313250	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228822737					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	4 bp distal
Gm70165	predicted gene, 70165	867 bp upstream
Rr601063	regulatory region 601063	94 bp distal
Rr601064	regulatory region 601064	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	88 bp upstream
Tssr43702	transcription start site region 43702	228 bp upstream
Tssr43703	transcription start site region 43703	183 bp upstream
Tssr43704	transcription start site region 43704	148 bp upstream
Tssr43705	transcription start site region 43705	95 bp upstream
Tssr43706	transcription start site region 43706	76 bp upstream