rs228804384 SNP Detail

Summary

• ID
  rs228804384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19366009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTTCGG CCTACCGGAT
  CGGCGCTGTT TCGTCCGACA GATCCAAAAT GCCCAGAGCA CCGGGCGCCC TCTCCGTGCT
  CCGCCCGTCG GGGCACCGCG CGCGTCCCCT GTGGAATTCC CGTACTAGGG CGTCGCGGGA
  GGCCGCTGCG GCGGTGACGC CAGCAGATCT CGGGGGCTCA GTGCTCCCGC TATGTCACCG
  Y
  CCGTGCCCTA CCTAGGCAAG GTTCCAGTGG CTTCCCTTGG CAAGTGAGGC CCCAGACTTT
  CGGGGCCTGC AGAGCAGAAA AAGACCAAAA ACTCCCGAGC GAGAAGGAGG GTCTTTGGAT
  GGAGAAAAGT GAAATTCTGC AACCAAGAAA ATGAGAAATG ACGATATTGG GAAGACAAAG
  ATGACAAAGA GACCAAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678397	CHEV_3_19211845	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228804384					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19366009 () rs orientation: forward

Symbol	Name	Function Class
3110037C07Rik	RIKEN cDNA 3110037C07 gene	19 bp downstream
Cpgi13002	CpG island 13002	within coordinates
Gm66414	predicted gene, 66414	within coordinates
Pde7a	phosphodiesterase 7A	523 bp upstream
Rr573969	regulatory region 573969	534 bp distal
Rr573970	regulatory region 573970	198 bp distal
Rr573971	regulatory region 573971	within coordinates
Tssr28510	transcription start site region 28510	1140 bp downstream
Tssr28511	transcription start site region 28511	986 bp downstream
Tssr28512	transcription start site region 28512	372 bp downstream
Tssr28513	transcription start site region 28513	350 bp downstream
Tssr32696	transcription start site region 32696	582 bp upstream
Tssr32697	transcription start site region 32697	531 bp upstream
Tssr32698	transcription start site region 32698	501 bp upstream
Tssr32699	transcription start site region 32699	467 bp upstream
Tssr32700	transcription start site region 32700	442 bp upstream
Tssr32701	transcription start site region 32701	347 bp downstream