rs228800901 SNP Detail

Summary

• ID
  rs228800901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132612975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGGACAT ATATTCACTA
  GAGGGCTGGG CCATGGAGTG GACATATAAG CCATGTTTAT GGTAAAACTC CAGATAGACA
  GCATAAACTG CTCCTTTGCT TTCTCTTTTA ATTATTTATT TTTATGCTCA TTGGTCTTTT
  GCCTGTACCT GTGAGGGTGA CAGAGCCCCT GGACCTGGAG TTACAGAGAG CTGTGAGCTG
  Y
  CATGTGAATG CTGGGAATTG AACCTGTGTC CTCTGGAAGA GCAGCCAGTG TTCTTAACTG
  CAGAGTCATT TCTCCAGCCC CAAACTATGC CTTTTCAAGG ATGAAAAACT CAAGTACCAG
  GTAATTGATG AAGAGGTATA TTCTCCCATC AGAGAGATCA GGGACACTCA GGTGGAAGCA
  GACTGCCACT GCAAACCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363303961	MGP_WTSI_4_132441579	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228800901					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363303961	MGP_WTSI_4_132441579	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132612975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14976	CpG island 14976	673 bp distal
Gm13033	predicted gene 13033	within coordinates
Gm70413	predicted gene, 70413	within coordinates
Rr601102	regulatory region 601102	1123 bp distal
Rr601103	regulatory region 601103	351 bp distal
Rr601104	regulatory region 601104	1996 bp proximal
Stx12	syntaxin 12	1206 bp upstream
Tssr39425	transcription start site region 39425	1682 bp downstream
Tssr39426	transcription start site region 39426	1112 bp downstream
Tssr43723	transcription start site region 43723	1163 bp upstream
Tssr43724	transcription start site region 43724	1141 bp upstream
Tssr43725	transcription start site region 43725	874 bp upstream