rs228794705 SNP Detail

Summary

• ID
  rs228794705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130909524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCCACC ACCCTTTAGG
  TGTGGCTTTT GCTCTCGGTC ATCCTGGAAC ATCTTGCCAT CTTTGGTTTG TTCTCTCCCT
  GTCTTGCCTC TGGTAGAGCT GGGTTTCTGT GCTTCTATTC AACCATGTAC AAGAACCATG
  TGCCACCTGC CATGTGCCAA GCCTGTGCCA GTCCCTGTGA GCGAGCAGCC CACCCCGTGA
  R
  TTATCATGTG AGGAGCTATG AGGAGCAGGA AGGGGCCCGG ATGACTTCAG CAGACAGTAT
  GAAGCAAGCA CTGTGCGATT TATGCTCCCT GGCCACATGC CCACAGATGG TGTCTGAGAC
  ACTAGCGTTT AATATTTGAA TTCTCCACAT TCTAGCCTAG ACATTTTGGT TGCAAGAAGA
  AAATTGACTC CAGTTGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355675354	MGP_WTSI_2_130893340	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228794705					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355675354	MGP_WTSI_2_130893340	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130909524 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	16 bp proximal
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	1616 bp downstream
Tssr20240	transcription start site region 20240	1108 bp upstream
Tssr26336	transcription start site region 26336	273 bp upstream
Tssr26337	transcription start site region 26337	521 bp downstream
Tssr26338	transcription start site region 26338	851 bp downstream
Tssr26339	transcription start site region 26339	925 bp downstream
Tssr26340	transcription start site region 26340	1007 bp downstream
Tssr26341	transcription start site region 26341	1272 bp downstream
Tssr26342	transcription start site region 26342	1293 bp downstream
Tssr26343	transcription start site region 26343	1347 bp downstream
Tssr26344	transcription start site region 26344	1402 bp downstream