rs228791603 SNP Detail

Summary

• ID
  rs228791603
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108289606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTTCG
  TGCATGATGT GTGTAGGGGA CAGGACAGGA TCTCATTATG TAGCCCAGGC TGGCTGGCCT
  CAGATAATTT TCATGCAACT CATCCCCATG TGCTGGGATT ACAGGCATGT GCAACCACAC
  CCACCTAGAA GGTCTTATTG AACCCTGTTT ACTAGGTGAA ATACAACTCT TTCCAACATC
  T
  GTTCCATATT TGTGTGTATA TGAATTGATG TACCCTGTGC TTCAACCACA CTGCATTTTC
  TCATTCAATA GACGAAAACC TTATTTCCTT ATATCCAAAG AGATGCCAGT GTACTCGTGT
  CTAGTTGTGT ACTAGTACAA CAGTTAAGAT ACAGAACCAA TCTAGATGTC TTCTGTCAGT
  GAATCAATAG TTAAATAAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321252519	CHEV_4_108105014	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228791603					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108289606 () rs orientation: forward

Symbol	Name	Function Class
Gm40223	predicted gene, 40223	within coordinates
Rr597185	regulatory region 597185	1022 bp distal
Rr597186	regulatory region 597186	454 bp distal
Rr597187	regulatory region 597187	981 bp proximal
Tssr38291	transcription start site region 38291	1027 bp downstream