rs228786606 SNP Detail

Summary

• ID
  rs228786606
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79105486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATCATCT TTCCCACATC
  CATTGAACTT CCTAAAAACC TTAGCTAGAC TTCCTGAGAA CTCCTGTAAG GCCCTTAGCA
  TAAGACACAA ACTGTAAGAA CACCCCAACA CTCGCCAGGG AACATGGGCA GTGTAAACAT
  GGGTCGTGCT ATTTCCAGCT ATGGAGTCTA TTTTCCAGAA GGAAAGTGTT CCCTCAGTAG
  C
  AAAGATCTCT GTAGTCCTTG CCCGGGGATT TAGGAGAGTT GGCCTTCGAC CTCAAAATAG
  CTCTGGTCCC ATCTGGATTA AGATGTCTGA CAGCAGGCCC ACAATTTGAA GTTGGAAAGT
  CTGTTCCAAA CCAGTTGTCC GTTCCTTAAG TCCTGAATGT TCCTTCGTTA AGTAGTCATC
  CCTTTGTCCT GAAAAAATAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323759326	CHEV_11_79028162	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228786606					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79105486 () rs orientation: forward

Symbol	Name	Function Class
Gm11200	predicted gene 11200	1417 bp downstream
Gm74268	predicted gene, 74268	within coordinates
Rr402771	regulatory region 402771	292 bp downstream
Rr452198	regulatory region 452198	within coordinates
Rr452199	regulatory region 452199	517 bp distal