rs228753511 SNP Detail

Summary

• ID
  rs228753511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137572089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCTGGTG GTGGTATGTC
  ATCCCTAAAC TCCTAACATT CTATTTAAGA AGAAAATTCC TACACTCCCA TTGTTTCTAG
  AAGAGATTTC AGTACAGGGT GCTTTCATGG GGTTTGGCTT TCCACTTAGT TTTTGCTAAG
  ATCATTGTTC ATCCCTCAAG TTTTCACTTT GTATATGAAT TTTACCTGCT TTGAGTTCAT
  R
  TATTGTTTTT TTAAATGTTT ATCCAGAAGG TAGACTTAAT CTGTGTCCCT CTCCTAGGTG
  TCATCCCACA CATCCACAAA TCGCTGATCG GGAAGAAAGG ACAACAGAAG ACTGTTTAAG
  GATGCCTGGA TTCCTTATTA TCTCAGGACT CTAAATATTC CTAACAGCTG TCCAGTGTTG
  GTGATTCCAG TGGACTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359894915	MGP_WTSI_3_137529292	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228753511					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359894915	MGP_WTSI_3_137529292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137572089 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13866	CpG island 13866	500 bp distal
Cpgi13867	CpG island 13867	1023 bp proximal
Dnajb14	DnaJ heat shock protein family (Hsp40) member B14	712 bp upstream
H2az1	H2A.Z variant histone 1	Intron
Rr367565	regulatory region 367565	1821 bp downstream
Rr398061	regulatory region 398061	323 bp downstream
Rr585998	regulatory region 585998	1831 bp distal
Rr586000	regulatory region 586000	1705 bp distal
Rr586001	regulatory region 586001	1734 bp distal
Rr586002	regulatory region 586002	1594 bp distal
Rr586003	regulatory region 586003	1093 bp distal
Rr586004	regulatory region 586004	556 bp distal
Rr586005	regulatory region 586005	within coordinates
Rr586006	regulatory region 586006	857 bp proximal
Rr586007	regulatory region 586007	1427 bp proximal
Tssr31912	transcription start site region 31912	1803 bp downstream
Tssr31913	transcription start site region 31913	1764 bp downstream
Tssr31914	transcription start site region 31914	1737 bp downstream
Tssr31915	transcription start site region 31915	1207 bp downstream
Tssr31916	transcription start site region 31916	457 bp downstream
Tssr31917	transcription start site region 31917	390 bp downstream
Tssr31918	transcription start site region 31918	1430 bp upstream
Tssr31919	transcription start site region 31919	1479 bp upstream
Tssr31920	transcription start site region 31920	1531 bp upstream
Tssr31921	transcription start site region 31921	1550 bp upstream
Tssr31922	transcription start site region 31922	1630 bp upstream
Tssr31923	transcription start site region 31923	1734 bp upstream
Tssr31924	transcription start site region 31924	1749 bp upstream
Tssr31925	transcription start site region 31925	1793 bp upstream
Tssr35855	transcription start site region 35855	1997 bp upstream