rs228729791 SNP Detail

Summary

• ID
  rs228729791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114705725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATCCTGAA GTGAGTCCCT CACTTCAGGT
  GGCTGGTAAG TCCATTCCCT TTCTGGCCTC TGTGGGCATC AGACATAATA CACATACaaa
  aataataatt aataattaat CAGACAAAAT AATTAATCTT GAAGGAAGGA AGGAAGGAag
  R
  gagagagaga gagagagaga gaaagagaaa gaaagaaaga aagaaagaaa gaaagaaaga
  aagaaagaaa gaaagaaaag ggagggaggg agggagagag agagagagag agagagagag
  agagagagag agagagagag agGCAGAAAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321914673	CHEV_6_114678782	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228729791					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114705725 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Gm52917	predicted gene, 52917			1255 bp downstream
Rr636822	regulatory region 636822			1701 bp distal