rs228728320 SNP Detail

Summary

• ID
  rs228728320
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150132246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACATTT CCTTCTGCAA
  AACGGGGAGG TGAGGCCACT GCCCAAGGGT CCTTGCATGC TGGGCCAGTG TTTGCCTCTC
  TCTTCCTCAG AAGAACTCCC TTTCCCTTCC GTGTTGGAGG AATCGAGTCT CTCCCTCTTG
  ATGCAGAGAA TTTTGCTCTG GTGACCCAGG ACCGCTTCAG TCTCACGGCT GTGCTTGGCG
  M
  TCACTCTCAC GGGGACCCTG CTGAAGTGTG AATTCCAAGC GCGTGGAGGA CTGGAGATGA
  CGTGCACGGG TGTGAGTTTG CAGCTGATGA AGGGATTTCT GACATATAAC TAACCACCCA
  GGACGGAGAC ATAGAGCCTG TGTCACAATG GAGCCGAGGG CAGTTTGTCT CTGGAGCATC
  CTGGCTGAGC CGGAGATCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363652794	MGP_WTSI_4_149421898	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228728320					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363652794	MGP_WTSI_4_149421898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150132246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	310 bp proximal
Gm13067	predicted gene 13067	406 bp upstream
Gm69230	predicted gene, 69230	within coordinates
Rr377414	regulatory region 377414	540 bp upstream
Rr605155	regulatory region 605155	within coordinates
Rr605156	regulatory region 605156	725 bp proximal
Rr605157	regulatory region 605157	1314 bp proximal
Tssr40363	transcription start site region 40363	402 bp upstream
Tssr40364	transcription start site region 40364	489 bp upstream
Tssr40365	transcription start site region 40365	1384 bp upstream