rs228724406 SNP Detail

Summary

• ID
  rs228724406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34725370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCTCAT TAACAGTGTG
  TGTGTTTGGG GCTGGGGGGG GGGGGGTAAA TGGTGTTTGC CCCGCCCTCC AGGAGGCACT
  GTGTGCTGCA GGTTCCAGGC TAGCCATCCC CTCAGGTATC CTTTTAGGCA AAAGCAAAGT
  CTCTGAACTG ACGAGGTCAG ACTCAAGCTC ATAGAAGTTA TCGCAATTCA GAATGGTCCT
  Y
  CAGACGGACG CAAGCTAGGA ACTGGTTAGA AATGCCAACC TCTAAATGTC TTCTTTTCAA
  CAAAAGTCCT GGCTGATTAT GACGAACGGC AAAGTTAGAA AAGAAATTAA GCTTTCAGGA
  AAAATTGAGA GGAACGGGAA CCCACTGGTC AATAGTAGGC AATATTGTAC TTTGGATTTG
  TTGTTGTTGG GCACGAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402329728	MGP_WTSI_19_34822460	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228724406					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402329728	MGP_WTSI_19_34822460	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34725370 () rs orientation: forward

Symbol	Name	Function Class
Rr546785	regulatory region 546785	692 bp distal
Rr546786	regulatory region 546786	253 bp distal
Rr546787	regulatory region 546787	102 bp proximal
Slc16a12	solute carrier family 16 (monocarboxylic acid transporters), member 12	681 bp upstream
Tssr156164	transcription start site region 156164	1657 bp downstream
Tssr159005	transcription start site region 159005	855 bp upstream
Tssr159006	transcription start site region 159006	784 bp upstream
Tssr159007	transcription start site region 159007	751 bp upstream
Tssr159008	transcription start site region 159008	719 bp upstream
Tssr159009	transcription start site region 159009	657 bp upstream
Tssr159010	transcription start site region 159010	635 bp upstream
Tssr159011	transcription start site region 159011	521 bp upstream
Tssr159012	transcription start site region 159012	502 bp upstream
Tssr159013	transcription start site region 159013	476 bp upstream