rs228685038 SNP Detail

Summary

• ID
  rs228685038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:95689093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGCCCA AACTGGACCT
  TCTGGTAATA GGGTTTAATG ATTTAACAGT ATAAGCTCTT CACTGGCAGG AGGCAGTTGA
  CTTCCTGGCA CTAGGATTTT CAGCCAGTAA TTAGGTGACC TTTCTGTGCC TGGGATCCTT
  GACATGGAGC TTGGAGATGC CACAGGTACC ACCACCCTGC AGTGTGATAC TGGGGGGGGG
  R
  GGGGGGGGCT AAAGTCAAGC AGGTGATAAT TAGTCTCTCT GACAATCATC AGCTGGCCCC
  TTCCTCTCTA GCCTACATCA CCTCTCAGTG TGTTACCTGT CTCTCCCTTG TCTGTGCAGT
  CCACTGAGTC ATCATACCGC AAACGCTAAC ACCTAGCTAG GGTGGCAGAG AAACGGCAAT
  GTGTGAGAAA GTCCCCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss369287391	MGP_WTSI_6_95662106	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	SEA/GnJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs228685038					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	G	A	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369287391	MGP_WTSI_6_95662106	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95689093 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr635034	regulatory region 635034			within coordinates
Rr635035	regulatory region 635035			1121 bp proximal
Rr635036	regulatory region 635036			1165 bp proximal
Suclg2	succinate-Coenzyme A ligase, GDP-forming, beta subunit			Intron
				Noncoding-Transcript-Variant