rs228673274 SNP Detail

Summary

• ID
  rs228673274
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132570812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTACCTTG ATGCGGCTTT CGCGCTGCGT
  TTTCCGCCAG AAACCCTAGA GCTCTGCAAT CTGCATTAAC TCCCAGCTAC CCACCCCCTC
  GGGCTTCATC TAGCGATAAG CAGGTGATGG CTAGAGATAA GAAGTGATGG CTTTTTTTTT
  Y
  CCCCTTTTTC CAGCCTTCCT TCGAAACACT GCATCTGAAA ACAGAATCCT TACTCATTTG
  TCCTTTCTGA TCCCAAGTCT GATGTGTACG GCTCAGTGGT AGTGTGTTCA GCAGGCGCGA
  ATGAGGCCAC TGATTCAATT CCCCAAAACC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321336781	CHEV_4_132399416	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228673274					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132570812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14975	CpG island 14975	36 bp distal
Ppp1r8	protein phosphatase 1, regulatory subunit 8	332 bp upstream
Rr367719	regulatory region 367719	229 bp downstream
Rr367720	regulatory region 367720	42 bp downstream
Rr601096	regulatory region 601096	389 bp distal
Rr601097	regulatory region 601097	377 bp distal
Rr601098	regulatory region 601098	within coordinates
Rr601099	regulatory region 601099	40 bp distal
Tssr43718	transcription start site region 43718	556 bp upstream
Tssr43719	transcription start site region 43719	317 bp upstream