rs228671643 SNP Detail

Summary

• ID
  rs228671643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108615833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCATGA AGATGCAGAA
  CTCTTAGCTC CTTCTTTAGC ATCATAGCTG CCTTCATGCT GCCATGCTTC CTGCTATAAT
  GGTAATAAAC TAAATATTTG AAACTGAAAG CCAGGCCCAA TTAAATGTTT ACCTTTAAAA
  AAAAAAAAAG ATTTATATTA CTGCCGGGCG TGGCAGTGCA CACCTTTAAT CCCAGCACTC
  R
  GGAGGCAGAG GCAGGCAGAT TTCTGAGTTC AAGGCCAGCC TGGTCTACAA AGTGAGTTCC
  AGGATAGCCA GGGCTATACA GAGAAACCCT GTCTCAAAAA ACAAAAAATA AAAAAAATAA
  AAAAATATTT ATATTTCTAA ATTAATAATT AAATTATTAT GTTCACTGGG TAAAGTACCT
  AATGTGTAAG CATGAATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362788422	MGP_WTSI_4_108431241	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	G	A	A	G	G	G	G	G	G	A	G	A	A	G	A	A	A	G	G	G	G	A	G	G	A	G	A	A	A	A	G	A	A	A	G	A	A	G	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228671643					SNP	A	A	A	G	A	A	G	A	A	G	G	G	G	G	G	A	G	A	A	G	A	A	A	G	G	G	G	A	G	G	A	G	A	A	A	A	G	A	A	A	G	A	A	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362788422	MGP_WTSI_4_108431241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108615833 () rs orientation: forward

Symbol	Name	Function Class
Gm53266	predicted gene, 53266	within coordinates
Rr597213	regulatory region 597213	888 bp proximal
Zfyve9	zinc finger, FYVE domain containing 9	Intron