rs228666745 SNP Detail

Summary

• ID
  rs228666745
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59601197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCCAGGG CTGGTTTGTT
  AGCCCGTGAC CGGCTTTTTC AACTTGCAAG ACTACTGTAC AAACTCTTGA ACATTCTACA
  GCAGAAATCA AAGCAGGTTT GCTGTGCTTC TCAGGAAGGA CTTCTGCATG TGTATTCTGT
  GTTGTGTAGC AGAGGAGTTT GCTTGTTGTC TCCCCGGTTC TGTGTCGAGG AACAGAGTGT
  K
  TGTTTCTGCT GCCCTCCCCA CCCCTCTTCT GTCTATAGAT TCTGCCTATA GAACATTAGT
  GAGTCCCTGA CCGTAGTCTC CTTTTTGCCA CCTTGGTCAT TTTGACCACC TTGGTACGGA
  CTTGCTATTT GCATAGTCAT ATGGAGTCAT ATGTGTGTAT GTGTGTTCTC TGCAGCCATT
  CACACTGCTG CTATGGATAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141224	CHEV_4_59614069	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228666745					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59601197 () rs orientation: forward

Symbol	Name	Function Class
Hsdl2	hydroxysteroid dehydrogenase like 2	Intron
Rr593095	regulatory region 593095	1339 bp proximal
Rr593096	regulatory region 593096	1714 bp proximal