rs228650763 SNP Detail

Summary

• ID
  rs228650763
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164249351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGGGC TGGAGAGACT
  ACTCAGGGTT AAGAGCACTG GTGGCTGCTC TTCCAGAGGA CCTGAGTTCA ATTCCTCGCA
  ACTACTTGCT GGCTCACAAC CATCTGTAAT GGGATCTGAT GTTCTCTTCT GTCAGATGGT
  CTCTTCTGCC ATGCAGGCAT ACATGCAAAT AGAGCTCTCA TATCCATAAA TAAATTTTTT
  W
  AAGTAATCTA GTTGCTGTGT GAAAAACAAA CTAAAAGAGG CATCTGTAGC AAGGGAGAGA
  CAGATGGAAG GCTGAGTTGG GAAGGCAAGG GATAGTGGTT AGGACCAAGG TGAAGTTGGT
  AGGAATCTAA CGGATTCCAG ATGTGTTTTG AAGATGGAGC GGGCAGGACT TACTGATGAG
  GTCTAATAAT GCATTAACGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605791	CHEV_2_164232931	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228650763					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164249351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12658	CpG island 12658			411 bp proximal
Rbpjl	recombination signal binding protein for immunoglobulin kappa J region-like			Intron
				Noncoding-Transcript-Variant
Rr569601	regulatory region 569601			245 bp proximal
Rr569602	regulatory region 569602			467 bp proximal