rs228645939 SNP Detail

Summary

• ID
  rs228645939
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118455748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gcaggagtt tcaacagctc caaactagtc
  tggagctcca aggccagatc GACACCCCAC CCCCAATCTG TTTTACTTCT ATTCCCTTAG
  AGGGTGAGTG TATATAATTC CCAGATTCTC AGGAAAATTT AATACTGAAA GACCTTTTTT
  W
  AAAAAGCAAT ACTGTACTTC CAAATAACTG TTCAACAGTC TAACAAAGGA TAGCTGAGGG
  ATATGGGGAG GGAGAGCCTT AATTAATCTC TCACACTAAG GGATCCAGAG GAGGCTGGAG
  GAGTTTTAGG AATAGAAGAC TCCAGGTATG                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321924620	CHEV_6_118428805	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228645939					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118455748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17903	CpG island 17903	177 bp proximal
Rr637483	regulatory region 637483	466 bp distal
Rr637484	regulatory region 637484	within coordinates
Rr637485	regulatory region 637485	523 bp proximal
Rr637486	regulatory region 637486	1722 bp proximal
Rr637487	regulatory region 637487	1883 bp proximal
Tssr62662	transcription start site region 62662	450 bp downstream
Zfp9	zinc finger protein 9	Intron