rs228644683 SNP Detail

Summary

• ID
  rs228644683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75848984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAAGTGT TTGTCCTTGG
  ATGGGTGGTG GCAGCAGGCA TCCATCCTTT CTTCATATCA GCCTTTAAAT TTTATGACAT
  TATAATGCTT GATATAATTT ATATGCATTT CTAAAAGCCA CAGTGATTTA TTTCTAGTGG
  GGAGTCTTCA ATCAACTGGG ATTAGAGGGT TAAAATCTCT TTCTTAAGAA ACAGCCACCT
  Y
  AATTCCAGTG AGAATGTCTT TCTCTTTGTT CTTAAGGAGT GAAGCCAGAG CCTGTGATAT
  TACCTTGTGT CACTTGATCT GGAAGAGGGG CGCTGCCTAG TTGTAACGTG TCTTATTGAA
  AAGCTAGGTG AGAGATGACA CTCACACCAT TTTGGTGCTT ATAGCAGTCA TGAGGGCAGG
  TCCAAGCCTT GCTCTTAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320352424	CHEV_2_75856697	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228644683					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75848984 () rs orientation: forward

Symbol	Name	Function Class
Gm75271	predicted gene, 75271	545 bp downstream
Pde11a	phosphodiesterase 11A	Intron
Rr559634	regulatory region 559634	1228 bp distal