rs228643824 SNP Detail

Summary

• ID
  rs228643824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163321525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTATTTA TAATAATAAA
  TAAATCTTTT TTTTTTTTTA AAGACAAGGT CTCATGTAGC TTGAATTCAT TCACATATCT
  AAGAATGAGT TTGAACTCCA GATTGCCCCC CCCCTCCACC TCTGCTTCCT GAGTAATGGG
  ATTCTAGGTC AGTATGACAA CACTTGGCTC CTAAGCTATA ATTTATATTT TTATTTATTC
  Y
  AATATTTATT TTCTGTCTCC CTTACTTAGA TGCTAGATCG AGAGAGTACT CTGTTACATT
  CACTGGTATA GCCCAGTGTC TAGAACAGTA CCTGGAGCTT ACAAAGCGGT TAAACAATTG
  TGTTACTGAA CAAATCAATC AATTACTGTT GGTATGGGGT CTTGCTCATG CTCAGTAAAT
  ACTCTTCCCT GAGCTGTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320603398	CHEV_2_163305341	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228643824					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163321525 () rs orientation: forward

Symbol	Name	Function Class
Rr569389	regulatory region 569389	909 bp proximal
Rr569390	regulatory region 569390	1005 bp proximal
Rr569391	regulatory region 569391	1237 bp proximal
Rr569392	regulatory region 569392	1905 bp proximal