rs228638567 SNP Detail

Summary

• ID
  rs228638567
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121361274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTCATC AGAGAGGCCA
  TGGAGATCCC AAGAGCCACA GACATATCTG CAAAGAAGAG AGTCACCAGA GGAAAAAAAA
  CCCTTAAGTG TCCAGGGATG GTCACATGGC CAACAAAACC CAGATCCAAC ACAGCAGGTG
  GTGAGCAAGC ACAACAGGAA GGGAGGAGGC CAAGCACCTC TGGGGGTCTC CTCATAGCTC
  C
  TCAGGACTCC TCATAGCTCC TCAGGACTCC TCATAGCTCC TCAGGACTCC TCATGTCTCC
  TAACAGCTCC TCATGTCTCT TCACAGCTCC TCATGTCTCC TCACAGCTCC TCACAGCTCC
  TCATAGCTCC TCAGGACTCC TCCCGTCTCC TCACAGCTCC TCCCGAGTAA CCCTCTCAGT
  CTCAAATGAC CTCACCTGTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	LEWES/EiJ	MA/MyJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss359478265	MGP_WTSI_3_121270543	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	LEWES/EiJ	MA/MyJ	SEA/GnJ	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs228638567					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359478265	MGP_WTSI_3_121270543	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121361274 () rs orientation: forward

Symbol	Name	Function Class
Gm33547	predicted gene, 33547	within coordinates
Rr584118	regulatory region 584118	within coordinates