rs228633596 SNP Detail

Summary

• ID
  rs228633596
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108426604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGATTGCCT TTGGTGTATA ACTTCTTATG
  CTGGTAGCCA TGCCAAATGA GCAGAAGAGA GATGATATTC TTTTCCGCTG GTTCAGCCTT
  TTTCTTTTCC CTCCCTCCAG TGCCTTTGAC ATGTGAGCGT ATTGTCCTCC TGTCGTTCTC
  W
  AGGAAATCAG GTGTCATTGA GCAGAAGTCC TTTGGATTAT TGGCCTAAAT CCTGCTCTCA
  TAGACAGCCA TAATTCAAAA AGAGCTACTG TTggggctga agagatggct cagtgcatca
  gagtgctatt aggcaagcat gagttctcat                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321892721	CHEV_6_108399637	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228633596					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108426604 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	1289 bp downstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636109	regulatory region 636109	362 bp distal
Rr636110	regulatory region 636110	948 bp proximal