rs228622384 SNP Detail

Summary

• ID
  rs228622384
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154264789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCACACC CGGATTGGTT
  ATGCATGGGT TATGCTTACT ACCTCATTTG CATGTCTCTC ATCTGGTTAA CTTCTCTTTC
  ATCTGATTGG TTAACTTGTC TCTCATCTGA TTGGTTAACT TGTCTCTCAT CTGATTGGTT
  AACTCTCAAA ACCTCATCTT GGCAAAAAAA AAAAAAAAAA CAAAAACAAA AACAAAAAAA
  M
  AAAACCTTTA CTGCCTATGT ATACGTGGTG GCCAGTGGTA GCCAGCGCCA CCCAGCAATA
  GCACATGTGG CATCCCACAG CAGACATCCC AGGATGCACT GGAATCCCAG CCCCTCAGAC
  TAAATTTGCT TGGCCAGGTT GAGAACTTTT TCTGGCTTCA GTTTTCCCAT CTGTACTGAC
  CTGGATGAAG CTAAGGCGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	ZALENDE/EiJ
ss363762334	MGP_WTSI_4_153554441	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	DBA/1J	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RIIIS/J	SEA/GnJ	ZALENDE/EiJ
rs228622384					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363762334	MGP_WTSI_4_153554441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154264789 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr377451	regulatory region 377451	within coordinates
Rr606100	regulatory region 606100	662 bp proximal