rs228617498 SNP Detail

Summary

• ID
  rs228617498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:81845986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGGTGAAA ACTAGCATTG AGTTCTAATA
  GAGGAATGCA TGCTCTGAGG TAGCCTGTTC TGTTGGCATT GCTGCATTAT GAGTACAATA
  GCAGGTTGTT TGCTATAGCT AGCTAGTCTT CATTTGTAGT ACAGCAAGAA ATACTTGCTG
  Y
  GTTCTAACCT ATGCAAGGTG AAAGCATGGT CTTCGAATGA GGCTTCCTAT AATCTGCTTT
  TAAGAATGAA GGCAGAGCTT GGGGAGATAT TCCCAACAGA ATTACAGATA GTCCCTATAG
  TCTAGTAACC AAATTTGTCA ATTAAGAGAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320817229	CHEV_3_81742601	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228617498					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81845986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctso	cathepsin O			Intron
				Noncoding-Transcript-Variant
Rr578733	regulatory region 578733			304 bp proximal