rs228535539 SNP Detail

Summary

• ID
  rs228535539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73928691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATACTTATA TAttcctttc tttctctttc
  tctcttcctt ccttccttcc ttctttccct cacagagtga atggtccagt agggaataca
  gattagtaga tgagcactat taatctatta ataagtgggt cctctgatga ggtacattta
  R
  catgcagtgt gagtacacgg ggaaggctca cagatgtgac gaggcaggtt agCTGGGATT
  TAAAATAAGG TTAGTAATGA GCAGTGGAGT CTTGGGGAAG GGATTCCAGT GTGGTGTGTT
  GGAGGAAGCA AGTGAATTTC AATATGACTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320346653	CHEV_2_73936404	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228535539					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73928691 () rs orientation: forward

Symbol	Name	Function Class
Rr559280	regulatory region 559280	1045 bp distal
Rr559281	regulatory region 559281	1681 bp proximal