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rs228530080 SNP Detail
Summary
  • ID
    rs228530080
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:144508655 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAAATTTTG TGGAAATGTC
    ATTTATGCTG GGCCCATTGA CATGAATATT GTTTTAAATT ACAAGGTTGA CTCCATAATT
    ATATAGTTGG GTGGGTGTGA CTCTCTATTC AGTGTTTGAT CTATGTATGT ATGTATGTAT
    GTATGTATGT ATGTATGTAT GTATGTGTAT CTGTCTGTCT ATCTATCTGT CTGTCTGTCT
    R
    TCTGCAGGTA AGCCATATCT GGTTTAATGC TACTCACCAT TTTCCACATA GCCAGGTATA
    TATAAAGACT TGTTCTTCTG TCTTAAGCTT AGTCTGGCTT TGTTTTTTCT TGCCTGGACA
    CGCACTTTTA GGCTGTATCT ACCATTTCCA TGATAATCTG TAAAGTATCT TGTGTAGATG
    CCATCATTTT TAACAGTATC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SM/J
SWR/J
WSB/EiJ
ss360076615 MGP_WTSI_3_144465858 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SM/J
SWR/J
WSB/EiJ
rs228530080 SNP G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss360076615 MGP_WTSI_3_144465858 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:144508655 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Clca3a2 chloride channel accessory 3A2 Intron
Rr586737 regulatory region 586737 1049 bp distal
Rr586738 regulatory region 586738 723 bp distal
Rr586739 regulatory region 586739 818 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory