rs228512362 SNP Detail

Summary

• ID
  rs228512362
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109764348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCAGCCG CAGTCCCGTA
  GCGGGACCGA GCGTTCCCAG CAGAGGGCAC TCACAGACAG GACATTCCGC AAGCTCTTCC
  TGGGTGACCC AGGGACTGCA CCTGTGGCCT GGGTTTCCCT TGATCATGCC CTGACAACCC
  GCGTCTGGGA AATTCAGTCA GAATCAATCC AAGACCACAA TTTAGAGACA GGTAAGCTTG
  R
  CGGTGGTTGC AGCGTTTGGT GAAACAAAAC GTCAAGACCA GCCTCTGCTA CATAGAGAAT
  CTGAGGCTAT CCTGAGTTAC AGTGAATCCT GTTTCAGAAC AAATCCCTCA AAGTCCCATT
  GTCTCTCTGG CCTTGAAGCT CTTGAGCCCC GGATCTAGGA TACTGCTTGT TGGACTAAAG
  GACTCACTAA TCACCTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394795	CHEV_7_117308655	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228512362					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109764348 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	206 bp upstream
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	731 bp distal
Rr653199	regulatory region 653199	1855 bp distal
Rr653200	regulatory region 653200	1876 bp distal
Rr653201	regulatory region 653201	217 bp distal
Rr653202	regulatory region 653202	821 bp distal
Rr653203	regulatory region 653203	202 bp distal
Rr653204	regulatory region 653204	146 bp distal
Rr653205	regulatory region 653205	147 bp distal
Rr653206	regulatory region 653206	within coordinates
Rr653207	regulatory region 653207	909 bp proximal
Rr653208	regulatory region 653208	1342 bp proximal
Tssr2367	transcription start site region 2367	215 bp upstream
Tssr2368	transcription start site region 2368	1085 bp downstream
Tssr68492	transcription start site region 68492	820 bp downstream
Tssr74253	transcription start site region 74253	266 bp upstream
Tssr74254	transcription start site region 74254	1211 bp downstream