rs228488303 SNP Detail

Summary

• ID
  rs228488303
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50396738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGCACAG TAATACCAGT
  TCAGGTTAGA TGAACTTCAT TGAATGGGCA GAGAAAGTAT CTGTTTCCCC AGAGACCTAG
  TAAAATACAG ATGAAGAAAA CAGATCCAGG CAAGGAGGGA AGACTGACAC CCAAGTGAAG
  CTTGCAAACA AATAACGAGA AATTATGAGA AATGTCCTTA AAGGCAGTAA GAAGGAAAAA
  G
  AAAAAAAAAA AAAACAAGGG GAAAAAAGTT GAAACCTTTG CCCCATTTAT GGAGACGGAG
  GAGACACATC AAACACATAT CTTCCCAAGG ACTTCTGAAA GCATAGTATT AGAAACGGAC
  AAGCCTACGA ATTTAAAATA TTAAAAAAGG CAGAGAATGC CACCCATTTG TTTAGCAAGT
  AAAAGGCCCG TGACAGTGTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357908147	MGP_WTSI_3_50246211	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228488303					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357908147	MGP_WTSI_3_50246211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50396738 () rs orientation: forward

Symbol	Name	Function Class
Rr367428	regulatory region 367428	136 bp upstream
Rr576159	regulatory region 576159	1312 bp proximal
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	Intron
Tssr873	transcription start site region 873	1223 bp upstream
Tssr29027	transcription start site region 29027	1458 bp upstream
Tssr33166	transcription start site region 33166	within coordinates
Tssr33167	transcription start site region 33167	423 bp downstream
Tssr33168	transcription start site region 33168	1127 bp downstream
Tssr33169	transcription start site region 33169	1167 bp downstream
Tssr33170	transcription start site region 33170	1194 bp downstream
Tssr33171	transcription start site region 33171	1223 bp downstream
Tssr33172	transcription start site region 33172	1250 bp downstream
Tssr33173	transcription start site region 33173	1289 bp downstream
Tssr33174	transcription start site region 33174	1314 bp downstream
Tssr33175	transcription start site region 33175	1489 bp downstream