rs228471997 SNP Detail

Summary

• ID
  rs228471997
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151946447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCATT TTTGTGGTTA
  TTTCAGTCTG TTCTTTGGGA GGTGGTTTTA TGATCTTGTT CTGAATTTTA TGGTATGTTC
  CTAGAGCTGG TGTCTTATGC CTTGGTTTCT GGGACTTATG GTCTATTCCT GAAGTTGGTT
  CCTTATAGCC TTTAAAAAAA AAAAAAAAGC AAGCCGGGGG GGGGGGGGGG GGCGTGGTGG
  M
  GCAAGCCTTT AATCCCAGCA GAGGAGGCAG AGGCAGGTGG ATTTCTGAGT TCGAGGCCAG
  CCTGGTCTAC AAAGTGAGTT CCAGGACAGC CAGGGCTTCA GAGAAACCCT GTCTTGAAAA
  ACAAAAACCA AAACAAACAA AAAAGGCTGG TTCTTCAAAT GGAGCCAAAT GGGGTTTATA
  CTGTCCTTTC AACATCAGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356144610	MGP_WTSI_2_151930263	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs228471997					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144610	MGP_WTSI_2_151930263	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151946447 () rs orientation: forward

Symbol	Name	Function Class
9230118N01Rik	RIKEN cDNA 9230118N01 gene	150 bp downstream
Cpgi12438	CpG island 12438	481 bp proximal
Gm31475	predicted gene, 31475	1363 bp upstream
Rr567286	regulatory region 567286	1534 bp distal
Rr567287	regulatory region 567287	156 bp proximal
Rr567288	regulatory region 567288	919 bp proximal
Rr567289	regulatory region 567289	981 bp proximal
Rr567290	regulatory region 567290	1133 bp proximal
Rr567291	regulatory region 567291	1575 bp proximal
Srxn1	sulfiredoxin 1 homolog (S. cerevisiae)	989 bp upstream
Tssr20767	transcription start site region 20767	275 bp upstream
Tssr20768	transcription start site region 20768	387 bp upstream
Tssr20769	transcription start site region 20769	1195 bp upstream
Tssr20770	transcription start site region 20770	1729 bp upstream
Tssr26780	transcription start site region 26780	840 bp downstream
Tssr26781	transcription start site region 26781	1513 bp downstream