rs228444200 SNP Detail

Summary

• ID
  rs228444200
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110251394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGTCAG TCCTCCGTGA
  CTCATCATGC CCTTGTAGCT GATACCTCTG TTGCCTCACC CTCTTCTTGA GGGGAAGACC
  ACAGGCGGGT TGGGAAAGGA CTCTCTCTGC TGTGATGGTG GTGACTGTAC AGCATCTTTC
  CCATAGGATA CCCAAGAAAC CAGTTTTAAT GATAAGCAAG ACGTCTCTGA AAAGGAAAAG
  W
  TCGAAGATGT GCCCCCTCAC ATCAGGAACA TTTATGAAGA TGCCAAGTAT GATATCATCG
  GCAACATCCT GAAAAATTTC TAGGGCTGGA AAGAGGAGGG AGGTGCTCCC TGCATACTAT
  GACCTCCTCT TTACCTCCAC TACCCATCTC CCCCTGCTGC ATTCAGGATC TGCCCCTCCT
  TCCTGCCCTT CCCAGGAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902786	MGP_WTSI_9_110324830	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228444200					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902786	MGP_WTSI_9_110324830	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110251394 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	Coding-NonSynonymous
Tssr3020	transcription start site region 3020	1437 bp downstream
Tssr3021	transcription start site region 3021	1030 bp upstream
Tssr3022	transcription start site region 3022	583 bp upstream
Tssr3023	transcription start site region 3023	42 bp downstream
Tssr3024	transcription start site region 3024	65 bp downstream
Tssr3025	transcription start site region 3025	144 bp downstream
Tssr3026	transcription start site region 3026	200 bp downstream
Tssr3027	transcription start site region 3027	283 bp downstream
Tssr3028	transcription start site region 3028	361 bp downstream
Tssr3029	transcription start site region 3029	376 bp downstream
Tssr3030	transcription start site region 3030	397 bp downstream
Tssr3031	transcription start site region 3031	570 bp downstream
Tssr87363	transcription start site region 87363	1493 bp downstream
Tssr87364	transcription start site region 87364	1442 bp downstream
Tssr87365	transcription start site region 87365	1408 bp downstream
Tssr87366	transcription start site region 87366	619 bp downstream
Tssr87367	transcription start site region 87367	581 bp downstream
Tssr87368	transcription start site region 87368	48 bp downstream
Tssr87369	transcription start site region 87369	30 bp downstream
Tssr87370	transcription start site region 87370	within coordinates
Tssr87371	transcription start site region 87371	37 bp upstream
Tssr87372	transcription start site region 87372	93 bp upstream
Tssr87373	transcription start site region 87373	123 bp upstream
Tssr87374	transcription start site region 87374	164 bp upstream
Tssr87375	transcription start site region 87375	182 bp upstream
Tssr87376	transcription start site region 87376	204 bp upstream
Tssr87377	transcription start site region 87377	212 bp upstream
Tssr87378	transcription start site region 87378	262 bp upstream
Tssr87379	transcription start site region 87379	312 bp upstream
Tssr87380	transcription start site region 87380	525 bp upstream
Tssr91616	transcription start site region 91616	1452 bp upstream
Tssr91617	transcription start site region 91617	1427 bp upstream
Tssr91618	transcription start site region 91618	1407 bp upstream
Tssr91619	transcription start site region 91619	within coordinates
Tssr91620	transcription start site region 91620	83 bp downstream
Tssr91621	transcription start site region 91621	178 bp downstream
Tssr91622	transcription start site region 91622	220 bp downstream
Tssr91623	transcription start site region 91623	682 bp downstream