rs228437716 SNP Detail

Summary

• ID
  rs228437716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93293350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATGGTCT CCCCCATCCT
  TCCCACTTCC CAACTATGCC GCTGGCGGTC CTCTGAAGCC CTCCTGTTCA CCCCTTTGAG
  TCCATCACTT TCCCCAGGGG CTCACCCTTA GGCCTCCAAC TGGGAGGCAA CTCCCCGGCT
  CCGCCCTTCC CGGGGGATTC TCTGCTCCGC CCCGAGCCTG TTCCCCTTAG CAACCTGGCT
  Y
  AGGGCTATAA GCCTGGGGCC CCGACGCTGG CATTCTAGGA CGGGCGTATC CTGGTGCAAC
  CCGGGAATGG CGTGGGAGCG TTCGCGTTCC AAGACCAGGT CTCCGTGTGG AGGCGGCTGG
  AGCCAAGCAC TTTCTGAAAA TACTAACAGC TACCAGTGGT TGAACTTTTG CTCAAAGACA
  GGATGAAAGC CAACAGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354855748	MGP_WTSI_2_93303162	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228437716					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354855748	MGP_WTSI_2_93303162	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93293350 () rs orientation: forward

Symbol	Name	Function Class
Cd82	CD82 antigen	mRNA-UTR
Cpgi11945	CpG island 11945	within coordinates
Gm10804	predicted gene 10804	within coordinates
Rr397140	regulatory region 397140	866 bp downstream
Rr397141	regulatory region 397141	369 bp downstream
Rr561207	regulatory region 561207	605 bp distal
Rr561208	regulatory region 561208	within coordinates
Tssr18997	transcription start site region 18997	1627 bp downstream
Tssr18998	transcription start site region 18998	960 bp downstream
Tssr25293	transcription start site region 25293	1049 bp upstream
Tssr25294	transcription start site region 25294	621 bp upstream
Tssr25295	transcription start site region 25295	570 bp upstream
Tssr25296	transcription start site region 25296	511 bp upstream