rs228380693 SNP Detail

Summary

• ID
  rs228380693
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110252370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCTAGAGT CTGTGAGGCC
  AGAGAAGGGG GACCATAGAG AAGTAAGAGG CCAGCTAGAT GGCTCAGTGG ATAGGGGTGC
  TTGCTACCAA ACTGGACAAC CTGAAGACAA TCCCAGGACT TACATGATGG AAAGAGAAAA
  CTACTGAAGG TTGTTCTCTG ACCTCTGCAT ATGTGCACGC ACACACACAT TCACACAAAA
  W
  AAAAAATAAG AATGTTACAT TCTTTCCCTA ATTTTTAAAA GAGAGGAACT GGGTCTGGGG
  ACAGAAGAGC CCAGGAAGGC AGAGTAGTCT GTCCCCAGTC TCTCTGGCTA CCTTTAGTTC
  CTTGGCACAA AGTTCCAGTC AAGACTTTAA ACTTTCACTT GGGTATTAAG AAGATCACCT
  CAATCATCAC TATCTGAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378902809	MGP_WTSI_9_110325806	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228380693					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378902809	MGP_WTSI_9_110325806	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110252370 () rs orientation: forward

Symbol	Name	Function Class
Ngp	neutrophilic granule protein	290 bp downstream
Tssr3022	transcription start site region 3022	1559 bp upstream
Tssr3023	transcription start site region 3023	920 bp upstream
Tssr3024	transcription start site region 3024	902 bp upstream
Tssr3025	transcription start site region 3025	813 bp upstream
Tssr3026	transcription start site region 3026	764 bp upstream
Tssr3027	transcription start site region 3027	667 bp upstream
Tssr3028	transcription start site region 3028	601 bp upstream
Tssr3029	transcription start site region 3029	585 bp upstream
Tssr3030	transcription start site region 3030	574 bp upstream
Tssr3031	transcription start site region 3031	382 bp upstream
Tssr87366	transcription start site region 87366	1595 bp downstream
Tssr87367	transcription start site region 87367	1557 bp downstream
Tssr87368	transcription start site region 87368	1024 bp downstream
Tssr87369	transcription start site region 87369	1006 bp downstream
Tssr87370	transcription start site region 87370	956 bp downstream
Tssr87371	transcription start site region 87371	928 bp downstream
Tssr87372	transcription start site region 87372	858 bp downstream
Tssr87373	transcription start site region 87373	818 bp downstream
Tssr87374	transcription start site region 87374	796 bp downstream
Tssr87375	transcription start site region 87375	773 bp downstream
Tssr87376	transcription start site region 87376	767 bp downstream
Tssr87377	transcription start site region 87377	753 bp downstream
Tssr87378	transcription start site region 87378	702 bp downstream
Tssr87379	transcription start site region 87379	657 bp downstream
Tssr87380	transcription start site region 87380	440 bp downstream
Tssr91619	transcription start site region 91619	972 bp upstream
Tssr91620	transcription start site region 91620	868 bp upstream
Tssr91621	transcription start site region 91621	789 bp upstream
Tssr91622	transcription start site region 91622	727 bp upstream
Tssr91623	transcription start site region 91623	292 bp upstream