rs228374795 SNP Detail

Summary

• ID
  rs228374795
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30495881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGTACCAA ATATTCACCC GCAGGCCAAT GGGCCTCAGG
  CTCATTTCTT TCTCCTAGCC TCATGGCTCT TCTGGTGAGA GTCCTCCTAC ACTTCGGGGG
  G
  GGGGCCGCCC CTCTGTCAAC AGCCCAACTC CATCTCCAGT ACTTTGAGGC TCACTAGCCT
  TCGCACCTCC AGCCCAGCCT GAGTTTCCTT ATCTGCACA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320221149	CHEV_2_30461389	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228374795					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30495881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11442	CpG island 11442			734 bp distal
Cstad	CSA-conditional, T cell activation-dependent protein			Intron
				Noncoding-Transcript-Variant
Gm74685	predicted gene, 74685			53 bp upstream
Rr554367	regulatory region 554367			1438 bp distal
Rr554368	regulatory region 554368			within coordinates
Rr554369	regulatory region 554369			64 bp proximal
Rr554370	regulatory region 554370			504 bp proximal
Rr554371	regulatory region 554371			759 bp proximal