rs228354021 SNP Detail

Summary

• ID
  rs228354021
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136641981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAATGA TCCCCCGGCA
  CCCCTGAGAC TCTGAGGATG CTGTTTGCTG CCTGTCAGCA TCTTCCGTAG AGACTGGTGC
  CTTCAGCTTA GCTCTCCACT TCCTGGAAGA GGAAGGTACT GGGGCTGCTC TCAAAGGCCT
  GGCTGTCACA TTCCTATTTC TGTCACAGGC CCCTCCCAGC AGAGCCCCTT CCTGGGAGAG
  W
  CAGGCAGTGC CTGCCAGGCT GTGTGCAGAG TGTCAACCTC ATGTCACTCA GAGGCTGCTG
  CCAAACTGAG GAGCCCCCAG CGGGGGGCGC CCGGGGCCTG GCCTCCTTTC CCCTGGGCCG
  GGCCTTTCTC CTTCTTGCTG TCACAACTTA GACTGCAGCC CCTGGGAGGT GACCCCACTG
  GTGGTTTGAG TGGCTTGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321359237	CHEV_4_136470585	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228354021					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136641981 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	1703 bp upstream
Rr602498	regulatory region 602498	1516 bp distal
Rr602499	regulatory region 602499	492 bp distal
Rr602500	regulatory region 602500	73 bp proximal
Rr602501	regulatory region 602501	1721 bp proximal