rs228346145 SNP Detail

Summary

• ID
  rs228346145
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151952584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGATGAT AGGGTGGCTG
  TTCCTCCTCA GAGTCTAGTC ACTTCATTTA CATGCTCTAC AGACAGAATC CTTGGGCTAG
  ACTTGAGAGC TTATTAAGTA AAGTCCTTGT CTTGGAAACA TGAGGATCTG AGTTGAGTCC
  CCAGAGCCCA AGTAAAACCA GGTGCACACC TGTAATCTCA GCACAGGGGA GGCAGAGACA
  G
  GCGGATTCCT CAGACTGCTA GCCAGTCCTG TCAGAGAATG GCATCCAAGG TTGTCTGGCT
  TCTCCTAGCT TGGGCAAGTA CACATACCAT ACACACATGC TGAATTCCAA ACCACTGTTG
  AGTTAGCTTT TGTCTTACCA TGCTTCTCCT TGCTTCAGCA AATGCCGCCT TCTCTTCCTC
  TATTCTCCTT CGGGCCTCCT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028498	CHEV_3_151909911	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228346145					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151952584 () rs orientation: forward

Symbol	Name	Function Class
Nexn	nexilin	Intron
Rr587498	regulatory region 587498	1298 bp distal
Rr587499	regulatory region 587499	1242 bp distal
Rr587500	regulatory region 587500	1076 bp distal
Rr587501	regulatory region 587501	784 bp distal
Rr587502	regulatory region 587502	485 bp distal
Tssr36179	transcription start site region 36179	161 bp downstream
Tssr36180	transcription start site region 36180	239 bp downstream
Tssr36181	transcription start site region 36181	263 bp downstream
Tssr36182	transcription start site region 36182	278 bp downstream
Tssr36183	transcription start site region 36183	306 bp downstream
Tssr36184	transcription start site region 36184	1009 bp downstream
Tssr36185	transcription start site region 36185	1025 bp downstream
Tssr36186	transcription start site region 36186	1133 bp downstream
Tssr36187	transcription start site region 36187	1310 bp downstream
Tssr36188	transcription start site region 36188	1378 bp downstream
Tssr36189	transcription start site region 36189	1404 bp downstream
Tssr36190	transcription start site region 36190	1482 bp downstream