rs228332783 SNP Detail

Summary

• ID
  rs228332783
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164176139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTC CTCACAGGTT GTCCTTGTTC
  T
  CTAGGTGTCA CTGAACTGAG AGAAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605479	CHEV_2_164159955	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228332783					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164176139 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Svs5	seminal vesicle secretory protein 5			Intron
				mRNA-UTR
				Splice-Site
Tssr744	transcription start site region 744			885 bp downstream
Tssr745	transcription start site region 745			842 bp downstream
Tssr746	transcription start site region 746			835 bp downstream
Tssr747	transcription start site region 747			822 bp upstream
Tssr748	transcription start site region 748			797 bp downstream
Tssr749	transcription start site region 749			760 bp downstream
Tssr750	transcription start site region 750			743 bp downstream
Tssr751	transcription start site region 751			691 bp downstream
Tssr752	transcription start site region 752			629 bp downstream
Tssr753	transcription start site region 753			619 bp downstream
Tssr754	transcription start site region 754			45 bp upstream
Tssr21562	transcription start site region 21562			1483 bp downstream
Tssr21563	transcription start site region 21563			1474 bp downstream
Tssr21564	transcription start site region 21564			1443 bp downstream
Tssr21565	transcription start site region 21565			1430 bp downstream
Tssr21566	transcription start site region 21566			1419 bp downstream
Tssr21567	transcription start site region 21567			1407 bp downstream
Tssr21568	transcription start site region 21568			1398 bp downstream
Tssr21569	transcription start site region 21569			893 bp downstream
Tssr21570	transcription start site region 21570			851 bp downstream
Tssr21571	transcription start site region 21571			823 bp downstream
Tssr21572	transcription start site region 21572			809 bp downstream
Tssr21573	transcription start site region 21573			778 bp downstream
Tssr21574	transcription start site region 21574			716 bp downstream
Tssr21575	transcription start site region 21575			57 bp upstream
Tssr21576	transcription start site region 21576			73 bp upstream
Tssr21577	transcription start site region 21577			92 bp upstream
Tssr27433	transcription start site region 27433			863 bp upstream
Tssr27434	transcription start site region 27434			833 bp upstream
Tssr27435	transcription start site region 27435			808 bp upstream
Tssr27436	transcription start site region 27436			791 bp upstream
Tssr27437	transcription start site region 27437			750 bp upstream
Tssr27438	transcription start site region 27438			733 bp upstream
Tssr27439	transcription start site region 27439			728 bp upstream
Tssr27440	transcription start site region 27440			712 bp upstream
Tssr27441	transcription start site region 27441			663 bp upstream
Tssr27442	transcription start site region 27442			653 bp upstream
Tssr27443	transcription start site region 27443			594 bp upstream
Tssr27444	transcription start site region 27444			583 bp upstream
Tssr27445	transcription start site region 27445			30 bp downstream
Tssr27446	transcription start site region 27446			74 bp downstream
Tssr27447	transcription start site region 27447			169 bp downstream
Tssr27448	transcription start site region 27448			783 bp downstream