rs228329137 SNP Detail

Summary

• ID
  rs228329137
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108869344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCCAGG GTCAAGCTGT
  TCATCACATC TCTGAAGTTA GTCCATCAGT TATCTTGAAG CCGAGTGACT TGATCCCTTA
  CCCACAGACC CCTCCCTATG TGCTTACAGC TTACGGGGAC AAGGGCTGCT TTTTCATTTC
  CTGCACCTAC CCCTTCCTCT TCCCCAGGGC TTGTACATGC TAGGCAAGTG CTCTACCACC
  R
  AGCCCCACTT CCAGCCCTTG GCTTTTACTT ACATTTTGAG TTTGTGTTCA CCTCCCAGCT
  TTGATAAACA CATTTCTTTG CACATTAGAA GGTTTCTTAA CATTCCCAAC CAGGGATCAG
  CATAGTTCTT GTAGGGAACC TTTAGCATTT AGTACCTCCC CCCCCCCCCA CCCCCGCATC
  ATAGCTCTCC AACTCTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320867107	CHEV_3_108764946	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228329137					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108869344 () rs orientation: forward

Symbol	Name	Function Class
Gm65815	predicted gene, 65815	435 bp upstream
Henmt1	HEN1 methyltransferase homolog 1 (Arabidopsis)	Noncoding-Transcript-Variant
Rr583357	regulatory region 583357	within coordinates