rs228317235 SNP Detail

Summary

• ID
  rs228317235
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74795210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTAACTCG ACTTAAGGTC TTAAAATAGA
  TGACAGCAAA AACATTTAAA AAATATATCT CACAGGTACA ATTGTCTTGA ATATCATCAG
  CACACTAACT CCGTAGTTGG ACTCCAGTCT TAAAGGGCAT TCCAGCTATT TTACGACAAA
  T
  GGAGGTAAGG CATGTGCCCA TTGTCCCTAG TCTTTAGCTT TTGATCATAG GATTTCAATG
  AATCACCATC AGTAGGAAGA GAGAGAAGTC TCAActatct atctatctat ctatctatct
  atctatctat ctatctatct atctatctat                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320348860	CHEV_2_74802923	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228317235					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74795210 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	590 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	55 bp distal
Rr559414	regulatory region 559414	311 bp distal
Rr559415	regulatory region 559415	234 bp proximal
Rr559416	regulatory region 559416	609 bp proximal